Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ABR9Uncharacterized protein. (395 aa)    
Predicted Functional Partners:
A0A178B1S8
Uncharacterized protein.
   
 0.910
A0A178BD96
PHP domain-like protein.
    
 0.902
A0A178B1R3
Ribonuclease P protein subunit.
   
 0.900
A0A178ADP2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.864
A0A178ALE1
SAGA-associated factor 11; Functions as component of the transcription regulatory histone acetylation (HAT) complex SAGA. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA [...]
    
  0.857
A0A178AYQ0
Uncharacterized protein.
    
  0.738
A0A178ALQ3
Rpr2-domain-containing protein.
   
 0.714
A0A178AP05
Uncharacterized protein.
   
 0.714
A0A178AZ73
Vitamin B6 biosynthesis protein; Belongs to the PdxS/SNZ family.
     
  0.662
A0A178B9E2
L30e-like protein.
    
  0.626
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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