A0A178AC93 protein (Stagonospora sp. SRC1lsM3a)

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Score

A0A178AC93

Small nuclear ribonucleoprotein Sm D2. (117 aa)

Predicted Functional Partners:

A0A178A8I3

0.999

A0A178A9I2

0.999

A0A178AD25

0.999

LSM3

0.999

A0A178ALN2

0.999

A0A178ANH9

0.999

A0A178B0R2

0.999

A0A178B3Q2

0.999

A0A178B658

0.999

A0A178B8G5

0.999

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A178A8I3	A0A178A9I2	A0A178A8I3	A0A178A9I2	RNA-binding domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.824
A0A178A8I3	A0A178AC93	A0A178A8I3	A0A178AC93	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A178A8I3	A0A178AD25	A0A178A8I3	A0A178AD25	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A178A8I3	A0A178ALN2	A0A178A8I3	A0A178ALN2	RNA-binding domain-containing protein.	Small nuclear ribonucleo protein F.	0.998
A0A178A8I3	A0A178ANH9	A0A178A8I3	A0A178ANH9	RNA-binding domain-containing protein.	Splicing factor 3B subunit 5/RDS3 complex subunit 10.	0.971
A0A178A8I3	A0A178B0R2	A0A178A8I3	A0A178B0R2	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A178A8I3	A0A178B3Q2	A0A178A8I3	A0A178B3Q2	RNA-binding domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.987
A0A178A8I3	A0A178B658	A0A178A8I3	A0A178B658	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
A0A178A8I3	A0A178B8G5	A0A178A8I3	A0A178B8G5	RNA-binding domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.999
A0A178A8I3	LSM3	A0A178A8I3	A0A178ADJ4	RNA-binding domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.462
A0A178A9I2	A0A178A8I3	A0A178A9I2	A0A178A8I3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding domain-containing protein.	0.824
A0A178A9I2	A0A178AC93	A0A178A9I2	A0A178AC93	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A178A9I2	A0A178AD25	A0A178A9I2	A0A178AD25	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.995
A0A178A9I2	A0A178ALN2	A0A178A9I2	A0A178ALN2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleo protein F.	0.998
A0A178A9I2	A0A178ANH9	A0A178A9I2	A0A178ANH9	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 5/RDS3 complex subunit 10.	0.979
A0A178A9I2	A0A178B0R2	A0A178A9I2	A0A178B0R2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A178A9I2	A0A178B3Q2	A0A178A9I2	A0A178B3Q2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A178A9I2	A0A178B658	A0A178A9I2	A0A178B658	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.995
A0A178A9I2	A0A178B8G5	A0A178A9I2	A0A178B8G5	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.807
A0A178A9I2	LSM3	A0A178A9I2	A0A178ADJ4	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999