Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ACA0Uncharacterized protein. (977 aa)    
Predicted Functional Partners:
A0A178AYU7
Histone H2A; Belongs to the histone H2A family.
    
 0.759
A0A178AEU1
Uncharacterized protein.
   
 0.752
A0A178AEW5
ATP-dependent RNA helicase-like protein dhh1; Belongs to the DEAD box helicase family.
   
 0.752
A0A178A9N8
SPT16-domain-containing protein.
    
 
 0.727
A0A178AT17
Histone H2B; Belongs to the histone H2B family.
    
 0.726
A0A178AFA4
Plus-3-domain-containing protein.
    
 
 0.710
A0A178AKS1
Insert subdomain of RNA polymerase alpha subunit.
   
 0.704
A0A178AMG7
WD40 repeat-like protein.
    
 0.696
A0A178AGI6
SPRY domain-containing protein.
    
 0.683
A0A178AV54
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.680
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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