Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ACM6XLF-domain-containing protein. (524 aa)    
Predicted Functional Partners:
A0A178AG05
DNA ligase.
    
 0.960
A0A178AEG5
Uncharacterized protein.
    
 0.944
A0A178B3K5
DNA_LIGASE_A3 domain-containing protein.
    
 0.909
A0A178A9Z7
GDPD-domain-containing protein.
    
 0.869
A0A178AJC6
Uncharacterized protein.
     
  0.711
A0A178AVI6
Uncharacterized protein.
     
  0.711
A0A178B634
NACHT domain-containing protein.
     
  0.711
A0A178AQU8
Matrin-type domain-containing protein.
     
  0.678
A0A178ASB7
SPOC domain-like protein.
    
 0.636
A0A178AGB3
Pkinase-domain-containing protein.
    
 0.618
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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