STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AD44Uncharacterized protein. (2980 aa)    
Predicted Functional Partners:
A0A178ABH2
LACT-domain-containing protein.
    
   0.766
A0A178ABN3
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 
  0.685
A0A178ADI0
DNA polymerase.
     
  0.683
A0A178ALU4
Histone-fold-containing protein.
     
  0.683
A0A178ATG8
Translation initiation factor IF-2.
   
 0.648
A0A178AA60
Uncharacterized protein.
    
   0.603
A0A178AIP5
Uncharacterized protein.
    
   0.603
A0A178BAF4
Uncharacterized protein.
      
 0.599
A0A178AFG3
Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.
   
  
 0.527
A0A178AFV5
PH domain-containing protein.
   
   0.526
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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