A0A178AD54 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AD54

Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (1722 aa)

Predicted Functional Partners:

A0A178BAJ1

0.985

A0A178B247

0.976

A0A178AS61

0.970

A0A178A9G4

0.955

A0A178B3M8

0.939

A0A178AHG9

0.936

A0A178ACZ9

0.931

A0A178AU22

0.931

A0A178A6X7

0.929

A0A178AD08

0.923

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178A6X7	A0A178A9G4	Mitochondrial division protein 1.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.766
A0A178A6X7	A0A178AD54	Mitochondrial division protein 1.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.929
A0A178A6X7	A0A178B247	Mitochondrial division protein 1.	Mitochondrial fusion and transport protein-like protein Ugo1.	0.538
A0A178A6X7	A0A178BAJ1	Mitochondrial division protein 1.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.972
A0A178A9G4	A0A178A6X7	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial division protein 1.	0.766
A0A178A9G4	A0A178AD54	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.955
A0A178A9G4	A0A178AHG9	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.525
A0A178A9G4	A0A178AS61	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	RING-CH-type domain-containing protein.	0.678
A0A178A9G4	A0A178AU22	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Bac_surface_Ag domain-containing protein.	0.425
A0A178A9G4	A0A178B247	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial fusion and transport protein-like protein Ugo1.	0.943
A0A178A9G4	A0A178B3M8	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Protein import receptor MAS20.	0.591
A0A178A9G4	A0A178BAJ1	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.942
A0A178ACZ9	A0A178AD08	Uncharacterized protein.	Mitochondrial import translocase, subunit Tom22.	0.999
A0A178ACZ9	A0A178AD54	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.931
A0A178ACZ9	A0A178AHG9	Uncharacterized protein.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.976
A0A178ACZ9	A0A178AU22	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.997
A0A178ACZ9	A0A178B247	Uncharacterized protein.	Mitochondrial fusion and transport protein-like protein Ugo1.	0.719
A0A178ACZ9	A0A178B3M8	Uncharacterized protein.	Protein import receptor MAS20.	0.999
A0A178AD08	A0A178ACZ9	Mitochondrial import translocase, subunit Tom22.	Uncharacterized protein.	0.999
A0A178AD08	A0A178AD54	Mitochondrial import translocase, subunit Tom22.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.923