A0A178ADU9 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178ADU9

Uncharacterized protein. (417 aa)

Predicted Functional Partners:

A0A178B0E2

0.970

A0A178AGR5

0.964

A0A178ATF0

0.962

A0A178AVX4

0.962

A0A178BA66

0.962

A0A178AFL6

0.960

A0A178AHN7

0.960

A0A178ALJ0

0.958

A0A178B3A4

0.958

A0A178AQ89

0.956

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178ADU9	A0A178AFL6	Uncharacterized protein.	RNA polymerase II transcription factor-like protein.	0.960
A0A178ADU9	A0A178AGR5	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.964
A0A178ADU9	A0A178AHN7	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.960
A0A178ADU9	A0A178ALJ0	Uncharacterized protein.	RNA polymerase II transcription factor-like protein B subunit 4.	0.958
A0A178ADU9	A0A178AQ89	Uncharacterized protein.	DNA repair helicase.	0.956
A0A178ADU9	A0A178ATF0	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.962
A0A178ADU9	A0A178AVX4	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.962
A0A178ADU9	A0A178B0E2	Uncharacterized protein.	Cyclin-like protein.	0.970
A0A178ADU9	A0A178B3A4	Uncharacterized protein.	DNA repair helicase rad25.	0.958
A0A178ADU9	A0A178BA66	Uncharacterized protein.	Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily.	0.962
A0A178AFL6	A0A178ADU9	RNA polymerase II transcription factor-like protein.	Uncharacterized protein.	0.960
A0A178AFL6	A0A178AGR5	RNA polymerase II transcription factor-like protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.970
A0A178AFL6	A0A178AHN7	RNA polymerase II transcription factor-like protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.993
A0A178AFL6	A0A178ALJ0	RNA polymerase II transcription factor-like protein.	RNA polymerase II transcription factor-like protein B subunit 4.	0.999
A0A178AFL6	A0A178AQ89	RNA polymerase II transcription factor-like protein.	DNA repair helicase.	0.999
A0A178AFL6	A0A178ATF0	RNA polymerase II transcription factor-like protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A178AFL6	A0A178AVX4	RNA polymerase II transcription factor-like protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.998
A0A178AFL6	A0A178B0E2	RNA polymerase II transcription factor-like protein.	Cyclin-like protein.	0.996
A0A178AFL6	A0A178B3A4	RNA polymerase II transcription factor-like protein.	DNA repair helicase rad25.	0.997
A0A178AFL6	A0A178BA66	RNA polymerase II transcription factor-like protein.	Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily.	0.995