Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AEN5Uncharacterized protein. (125 aa)    
Predicted Functional Partners:
A0A178AFX6
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.
    
 0.972
A0A178AKC4
Autophagy-related protein 3.
   
 0.972
A0A178B3Q6
WD40 repeat-like protein.
   
 0.972
A0A178AW35
Autophagy-related protein.
    
 0.908
A0A178BBB4
APG6-domain-containing protein.
    
 0.898
A0A178B8J7
Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.
   
 0.889
A0A178B9B0
Uncharacterized protein.
   
 0.889
A0A178BB89
SWIM-type domain-containing protein.
   
 0.889
A0A178AVQ5
Uncharacterized protein.
    
 0.873
A0A178AWC4
WW domain-containing protein.
    
 0.873
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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