Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AEP9Uncharacterized protein. (175 aa)    
Predicted Functional Partners:
A0A178AD25
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.989
A0A178AC93
Small nuclear ribonucleoprotein Sm D2.
   
 0.985
A0A178B0R2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.984
A0A178B658
Small nuclear ribonucleoprotein Sm D3.
    
 0.984
A0A178BDW4
Small nuclear ribonucleoprotein G.
   
 0.984
A0A178ATP2
Serine/threonine kinase receptor associated protein-like protein.
   
 0.974
A0A178ALN2
Small nuclear ribonucleo protein F.
   
  0.970
A0A178AJ98
Uncharacterized protein.
   
  0.904
A0A178APL2
Uncharacterized protein.
   
  0.904
A0A178BD41
Sm-like ribonucleo protein.
   
 0.902
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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