A0A178AEU1 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AEU1

Uncharacterized protein. (1699 aa)

Predicted Functional Partners:

A0A178AR26

0.989

A0A178AM49

0.980

A0A178A942

0.968

A0A178B6C8

0.968

A0A178AV54

0.956

A0A178BE24

0.944

A0A178ARI6

0.943

A0A178BBR1

0.943

A0A178B7Y0

0.917

A0A178AG85

0.912

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178A942	A0A178AEU1	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.968
A0A178A942	A0A178AG85	Hist_deacetyl domain-containing protein.	Chromo domain-containing protein.	0.717
A0A178A942	A0A178AM49	Hist_deacetyl domain-containing protein.	C2H2-type domain-containing protein.	0.714
A0A178A942	A0A178AR26	Hist_deacetyl domain-containing protein.	WD40 repeat-like protein.	0.988
A0A178A942	A0A178ARI6	Hist_deacetyl domain-containing protein.	DNA glycosylase.	0.864
A0A178A942	A0A178AV54	Hist_deacetyl domain-containing protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.977
A0A178A942	A0A178B6C8	Hist_deacetyl domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.997
A0A178A942	A0A178B7Y0	Hist_deacetyl domain-containing protein.	SET domain-containing protein.	0.948
A0A178A942	A0A178BBR1	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.864
A0A178A942	A0A178BE24	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.946
A0A178AEU1	A0A178A942	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.968
A0A178AEU1	A0A178AG85	Uncharacterized protein.	Chromo domain-containing protein.	0.912
A0A178AEU1	A0A178AM49	Uncharacterized protein.	C2H2-type domain-containing protein.	0.980
A0A178AEU1	A0A178AR26	Uncharacterized protein.	WD40 repeat-like protein.	0.989
A0A178AEU1	A0A178ARI6	Uncharacterized protein.	DNA glycosylase.	0.943
A0A178AEU1	A0A178AV54	Uncharacterized protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.956
A0A178AEU1	A0A178B6C8	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.968
A0A178AEU1	A0A178B7Y0	Uncharacterized protein.	SET domain-containing protein.	0.917
A0A178AEU1	A0A178BBR1	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A178AEU1	A0A178BE24	Uncharacterized protein.	Uncharacterized protein.	0.944