Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A178AF59Aa_trans domain-containing protein. (585 aa)    
Predicted Functional Partners:
A0A178BCA5
Amino acid transporter-like protein.
     
  0.874
A0A178AKS1
Insert subdomain of RNA polymerase alpha subunit.
     
  0.718
A0A178ALM7
Metallothionein-I gene transcription activator.
     
  0.718
A0A178AU90
DNA-directed RNA polymerases I.
     
  0.718
A0A178B4G2
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
     
  0.718
A0A178B885
RNA polymerase Rpb6.
     
  0.718
A0A178BB84
DNA-directed RNA polymerase II 19 kDa polypeptide.
     
  0.718
A0A178AI45
RPOL9 domain-containing protein.
     
  0.671
A0A178AV18
Uncharacterized protein.
     
  0.671
A0A178A9N9
TPR-like protein.
    
  0.633
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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