A0A178AF82 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AF82

Methylisocitrate lyase-like protein. (313 aa)

Predicted Functional Partners:

A0A178AKJ0

0.907

A0A178AK96

0.825

A0A178AZF6

0.802

A0A178B2W0

0.802

A0A178B3X3

0.775

A0A178B5P1

0.775

A0A178BCI8

0.774

A0A178AUE1

0.770

A0A178B031

0.767

A0A178ATV8

0.764

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AF82	A0A178AK96	Methylisocitrate lyase-like protein.	Acetyl-coenzyme A synthetase.	0.825
A0A178AF82	A0A178AKJ0	Methylisocitrate lyase-like protein.	Malate synthase; Belongs to the malate synthase family.	0.907
A0A178AF82	A0A178ATV8	Methylisocitrate lyase-like protein.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.764
A0A178AF82	A0A178AUE1	Methylisocitrate lyase-like protein.	Uncharacterized protein.	0.770
A0A178AF82	A0A178AZF6	Methylisocitrate lyase-like protein.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.802
A0A178AF82	A0A178B031	Methylisocitrate lyase-like protein.	AcetylCoA_hyd_C domain-containing protein.	0.767
A0A178AF82	A0A178B2W0	Methylisocitrate lyase-like protein.	Succinyl-CoA ligase-like protein subunit alpha.	0.802
A0A178AF82	A0A178B3X3	Methylisocitrate lyase-like protein.	2-isopropylmalate synthase.	0.775
A0A178AF82	A0A178B5P1	Methylisocitrate lyase-like protein.	Homocitrate synthase-like protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.775
A0A178AF82	A0A178BCI8	Methylisocitrate lyase-like protein.	Acetyl-CoA acetyltransferase IB; Belongs to the thiolase-like superfamily. Thiolase family.	0.774
A0A178AK96	A0A178AF82	Acetyl-coenzyme A synthetase.	Methylisocitrate lyase-like protein.	0.825
A0A178AK96	A0A178AKJ0	Acetyl-coenzyme A synthetase.	Malate synthase; Belongs to the malate synthase family.	0.969
A0A178AK96	A0A178ATV8	Acetyl-coenzyme A synthetase.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.890
A0A178AK96	A0A178AUE1	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.947
A0A178AK96	A0A178AZF6	Acetyl-coenzyme A synthetase.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.888
A0A178AK96	A0A178B031	Acetyl-coenzyme A synthetase.	AcetylCoA_hyd_C domain-containing protein.	0.971
A0A178AK96	A0A178B2W0	Acetyl-coenzyme A synthetase.	Succinyl-CoA ligase-like protein subunit alpha.	0.888
A0A178AK96	A0A178B3X3	Acetyl-coenzyme A synthetase.	2-isopropylmalate synthase.	0.899
A0A178AK96	A0A178B5P1	Acetyl-coenzyme A synthetase.	Homocitrate synthase-like protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.899
A0A178AK96	A0A178BCI8	Acetyl-coenzyme A synthetase.	Acetyl-CoA acetyltransferase IB; Belongs to the thiolase-like superfamily. Thiolase family.	0.948