Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AFD8Ribosome recycling factor. (280 aa)    
Predicted Functional Partners:
A0A178APZ6
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.965
A0A178ACZ6
Ribosomal protein S2.
  
 
 0.951
A0A178APU2
Uncharacterized protein.
  
 
 0.942
A0A178B6H6
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.935
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 
 0.929
A0A178AB55
50S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.928
A0A178AWU8
Ribosomal protein S16.
  
 
 0.924
A0A178B6D9
Uncharacterized protein.
  
 
 0.923
A0A178B2R0
Ribosomal protein L27.
  
 
 0.922
A0A178B725
37S ribosomal protein Mrp17.
  
 
 0.920
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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