Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AFQ3Tudor domain-containing protein. (303 aa)    
Predicted Functional Partners:
A0A178AXY5
DUF382-domain-containing protein.
   
 0.965
A0A178BB11
Splicing factor 3B subunit 1.
   
 0.963
A0A178ALS8
Matrin-type domain-containing protein.
    
  0.962
A0A178ASV6
Uncharacterized protein.
    
 0.948
A0A178ABM7
Uncharacterized protein.
    
 
 0.942
A0A178B1Y0
U2 small nuclear ribonucleo protein A.
    
 0.942
A0A178AH94
PHF5-like protein.
   
 0.926
A0A178ADS5
Uncharacterized protein.
   
  0.915
A0A178APB2
DEAD-domain-containing protein.
   
 0.906
A0A178AQU8
Matrin-type domain-containing protein.
   
 0.895
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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