Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AFW4Uncharacterized protein. (523 aa)    
Predicted Functional Partners:
A0A178AMN3
Rxt3-domain-containing protein.
  
 
 0.991
A0A178AR26
WD40 repeat-like protein.
    
 0.991
A0A178AN54
Mortality factor 4-like protein-like protein 1.
    
 0.968
A0A178A942
Hist_deacetyl domain-containing protein.
    
 0.966
A0A178BBS3
HDAC_interact domain-containing protein.
    
 0.960
A0A178BE14
FAS1 domain-containing protein.
    
 0.960
A0A178B6C8
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.956
A0A178ATU7
PHD domain-containing protein.
    
 0.945
A0A178AKR8
PAPA-1 domain-containing protein.
    
 0.932
A0A178AFB3
PHD finger domain-containing protein.
  
 
 0.909
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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