A0A178AG65 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AG65

Uncharacterized protein. (381 aa)

Predicted Functional Partners:

A0A178AJS2

0.937

A0A178AMH5

0.899

A0A178AE03

0.892

A0A178AKK9

0.891

A0A178AXI9

0.888

A0A178AG71

0.881

A0A178ACR6

0.877

A0A178AQJ9

0.877

A0A178ABF0

0.866

A0A178AZY1

0.866

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178ABF0	A0A178ACR6	Transcription initiation factor TFIID subunit 5.	Actin/actin-like protein; Belongs to the actin family.	0.608
A0A178ABF0	A0A178AG65	Transcription initiation factor TFIID subunit 5.	Uncharacterized protein.	0.866
A0A178ABF0	A0A178AG71	Transcription initiation factor TFIID subunit 5.	SGF29 C-terminal domain-containing protein.	0.996
A0A178ABF0	A0A178AJS2	Transcription initiation factor TFIID subunit 5.	Uncharacterized protein.	0.996
A0A178ABF0	A0A178AMH5	Transcription initiation factor TFIID subunit 5.	SNF5-domain-containing protein.	0.573
A0A178ABF0	A0A178AQJ9	Transcription initiation factor TFIID subunit 5.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.996
A0A178ABF0	A0A178AZY1	Transcription initiation factor TFIID subunit 5.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.995
A0A178ACR6	A0A178ABF0	Actin/actin-like protein; Belongs to the actin family.	Transcription initiation factor TFIID subunit 5.	0.608
A0A178ACR6	A0A178AE03	Actin/actin-like protein; Belongs to the actin family.	SANT_DAMP1_like domain-containing protein.	0.996
A0A178ACR6	A0A178AG65	Actin/actin-like protein; Belongs to the actin family.	Uncharacterized protein.	0.877
A0A178ACR6	A0A178AKK9	Actin/actin-like protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.997
A0A178ACR6	A0A178AMH5	Actin/actin-like protein; Belongs to the actin family.	SNF5-domain-containing protein.	0.995
A0A178ACR6	A0A178AQJ9	Actin/actin-like protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.995
A0A178ACR6	A0A178AXI9	Actin/actin-like protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.997
A0A178AE03	A0A178ACR6	SANT_DAMP1_like domain-containing protein.	Actin/actin-like protein; Belongs to the actin family.	0.996
A0A178AE03	A0A178AG65	SANT_DAMP1_like domain-containing protein.	Uncharacterized protein.	0.892
A0A178AE03	A0A178AG71	SANT_DAMP1_like domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.488
A0A178AE03	A0A178AKK9	SANT_DAMP1_like domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.999
A0A178AE03	A0A178AMH5	SANT_DAMP1_like domain-containing protein.	SNF5-domain-containing protein.	0.440
A0A178AE03	A0A178AQJ9	SANT_DAMP1_like domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.999