Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AGI3BTB domain-containing protein. (269 aa)    
Predicted Functional Partners:
A0A178B1F4
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.625
A0A178ABT4
PIN domain-like protein.
  
 
 0.590
A0A178B7A7
DNA polymerase.
   
 0.590
A0A178B736
Uncharacterized protein.
     
  0.588
A0A178AAS9
Glycyl-tRNA synthetase.
    
 0.584
A0A178AT66
DNA polymerase.
   
 0.581
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 
 0.570
A0A178AY40
Uncharacterized protein.
   
 0.558
A0A178ADI0
DNA polymerase.
   
 0.540
A0A178AR91
DNA polymeras-like protein epsilon subunit B.
   
 
 0.522
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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