A0A178AGV2 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AGV2

Uncharacterized protein. (487 aa)

Predicted Functional Partners:

A0A178B2M8

0.865

A0A178AJN7

0.770

A0A178AS57

0.638

A0A178B8X0

0.582

A0A178B0G6

0.557

A0A178AAF1

0.543

A0A178ABK8

0.543

A0A178AHT9

0.529

A0A178AHZ1

0.529

A0A178ARS1

0.529

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AAF1	A0A178AGV2	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A178AAF1	A0A178AHT9	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.758
A0A178AAF1	A0A178AHZ1	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A178AAF1	A0A178AJN7	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.528
A0A178AAF1	A0A178ARS1	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A178AAF1	A0A178AS57	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A178AAF1	A0A178B2M8	Uncharacterized protein.	RhoGAP-domain-containing protein.	0.793
A0A178AAF1	A0A178B8X0	Uncharacterized protein.	Uncharacterized protein.	0.736
A0A178ABK8	A0A178AGV2	Rho GTPase activation protein.	Uncharacterized protein.	0.543
A0A178ABK8	A0A178AHT9	Rho GTPase activation protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.736
A0A178ABK8	A0A178AHZ1	Rho GTPase activation protein.	Uncharacterized protein.	0.750
A0A178ABK8	A0A178ARS1	Rho GTPase activation protein.	Uncharacterized protein.	0.736
A0A178ABK8	A0A178AS57	Rho GTPase activation protein.	Uncharacterized protein.	0.956
A0A178ABK8	A0A178B2M8	Rho GTPase activation protein.	RhoGAP-domain-containing protein.	0.793
A0A178ABK8	A0A178B8X0	Rho GTPase activation protein.	Uncharacterized protein.	0.600
A0A178AGV2	A0A178AAF1	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A178AGV2	A0A178ABK8	Uncharacterized protein.	Rho GTPase activation protein.	0.543
A0A178AGV2	A0A178AHT9	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.529
A0A178AGV2	A0A178AHZ1	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A178AGV2	A0A178AJN7	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.770