Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AH16Pre-rRNA-processing protein-like protein TSR2. (192 aa)    
Predicted Functional Partners:
A0A178ACB9
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 
 0.960
A0A178ALU3
DUF663-domain-containing protein.
   
 
 0.938
A0A178AR58
Ankyrin.
   
 
 0.922
A0A178B3J3
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  
 0.898
A0A178AMW4
TPR-like protein.
   
  
 0.894
A0A178AWG3
Uncharacterized protein.
   
  
 0.891
A0A178ANT6
RPA43_OB domain-containing protein.
   
    0.887
A0A178AXB0
Low temperature viability protein.
   
 
 0.886
A0A178B7D0
Glutamate-rich WD repeat-containing protein-like protein 1.
   
  
 0.881
A0A178BBT1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
    0.878
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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