Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AH85MRP-L46 domain-containing protein. (343 aa)    
Predicted Functional Partners:
A0A178ARE4
Ribosomal protein L15.
   
 0.993
A0A178B090
Ribonuclease III.
   
 0.991
A0A178AB55
50S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 0.990
A0A178AML1
Translational machinery component.
   
 
 0.989
A0A178B2R0
Ribosomal protein L27.
   
 
 0.989
A0A178AMA8
Uncharacterized protein.
   
 0.987
A0A178AQ02
Mitochondrial 54S ribosomal protein YmL9.
   
 0.987
A0A178APK0
Ribosomal protein L2.
   
 0.986
A0A178AS39
PEBP-like protein.
   
 
 0.986
A0A178B6D9
Uncharacterized protein.
   
 0.985
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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