Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AH98SAP domain-containing protein. (621 aa)    
Predicted Functional Partners:
A0A178B3R1
Uncharacterized protein.
   
 0.994
A0A178AH77
Pinin_SDK_memA domain-containing protein.
   
 0.985
A0A178AQE1
ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.
    
 0.964
A0A178B3M5
RNA-binding domain-containing protein.
    
 0.958
A0A178AD22
Mago nashi protein.
    
 0.956
A0A178AH91
RNA-binding domain-containing protein.
   
 0.935
A0A178ASC9
Uncharacterized protein.
   
 0.935
A0A178AMA4
RRM domain-containing protein.
   
 0.931
A0A178AT19
Uncharacterized protein.
   
 0.931
A0A178ANT2
RNA-binding domain-containing protein.
    
 0.868
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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