A0A178AHE4 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AHE4

Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (425 aa)

Predicted Functional Partners:

A0A178ALZ5

0.996

A0A178AP68

0.995

A0A178AZL1

0.971

A0A178BC21

0.960

A0A178B892

0.953

A0A178ACN2

0.928

A0A178ADM0

0.910

A0A178AIQ5

0.896

A0A178AQ09

0.886

A0A178ARM4

0.886

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178ACN2	A0A178AHE4	Iron-sulfur clusters transporter atm1, mitochondrial.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.928
A0A178ACN2	A0A178ALZ5	Iron-sulfur clusters transporter atm1, mitochondrial.	Frataxin.	0.760
A0A178ACN2	A0A178AP68	Iron-sulfur clusters transporter atm1, mitochondrial.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.458
A0A178ACN2	A0A178AZL1	Iron-sulfur clusters transporter atm1, mitochondrial.	HAD-like protein.	0.513
A0A178ACN2	A0A178B892	Iron-sulfur clusters transporter atm1, mitochondrial.	Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.	0.460
A0A178ADM0	A0A178AHE4	Heme oxygenase-like protein.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.910
A0A178ADM0	A0A178ALZ5	Heme oxygenase-like protein.	Frataxin.	0.819
A0A178ADM0	A0A178AP68	Heme oxygenase-like protein.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.584
A0A178ADM0	A0A178AQ09	Heme oxygenase-like protein.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.720
A0A178ADM0	A0A178ARM4	Heme oxygenase-like protein.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.720
A0A178ADM0	A0A178AZL1	Heme oxygenase-like protein.	HAD-like protein.	0.803
A0A178ADM0	A0A178B892	Heme oxygenase-like protein.	Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.	0.757
A0A178ADM0	A0A178BC21	Heme oxygenase-like protein.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.535
A0A178AHE4	A0A178ACN2	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.928
A0A178AHE4	A0A178ADM0	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Heme oxygenase-like protein.	0.910
A0A178AHE4	A0A178AIQ5	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	COX15-CtaA-domain-containing protein.	0.896
A0A178AHE4	A0A178ALZ5	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Frataxin.	0.996
A0A178AHE4	A0A178AP68	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.995
A0A178AHE4	A0A178AQ09	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.886
A0A178AHE4	A0A178ARM4	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.886