Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AHV5Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
A0A178AXB0
Low temperature viability protein.
    
 0.951
A0A178B392
RIO1-domain-containing protein.
   
 0.950
A0A178AD35
rRNA processing protein-like protein Bystin.
    
 0.948
A0A178ALU3
DUF663-domain-containing protein.
    
 0.947
A0A178B3J3
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
    
 0.935
A0A178ABM8
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
    
  0.893
A0A178ANE0
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.877
A0A178ABV4
Serine/threonine-protein phosphatase.
    
 0.860
A0A178AS91
Topoisomerase 1-associated factor 1.
    
 0.846
A0A178B032
Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.836
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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