Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AHW9BTB domain-containing protein. (974 aa)    
Predicted Functional Partners:
A0A178AS32
Cyclin-like protein.
   
 0.960
A0A178ASG4
TAF-domain-containing protein.
   
 0.949
A0A178ASQ6
BRF1-domain-containing protein.
   
 0.948
A0A178AQA6
DUF3591 domain-containing protein.
    
 0.947
A0A178BBN0
Uncharacterized protein.
    
 0.947
A0A178AIX9
TFIID-31kDa-domain-containing protein.
   
 0.946
A0A178AMS8
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.946
A0A178BB64
TAFII55_N domain-containing protein.
    
 0.945
A0A178ABF0
Transcription initiation factor TFIID subunit 5.
    
 0.944
A0A178AAW0
SANT domain-containing protein.
    
 0.942
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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