Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AIN9CAF1-domain-containing protein. (611 aa)    
Predicted Functional Partners:
A0A178AH85
MRP-L46 domain-containing protein.
 
   
  0.796
A0A178AD35
rRNA processing protein-like protein Bystin.
   
   0.795
A0A178AR61
DUF427-domain-containing protein.
     
 0.676
A0A178ASX2
Uncharacterized protein.
     
 0.676
A0A178B8P2
Nudix hydrolase domain-containing protein.
     
 0.676
A0A178AQA7
Glucose-repressible alcohol dehydrogenase-like protein transcriptional effector.
      
 0.646
A0A178AMM6
RNA helicase.
   
 
 0.623
A0A178B7S8
Utp14-domain-containing protein.
    
   0.615
A0A178B1Y0
U2 small nuclear ribonucleo protein A.
    
   0.582
A0A178B7T3
RNase_PH domain-containing protein.
    
 0.567
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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