Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AIU4UBC-like protein; Belongs to the ubiquitin-conjugating enzyme family. (104 aa)    
Predicted Functional Partners:
A0A178B3F2
Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.
 
 
 0.986
A0A178ABV2
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.984
A0A178B762
Uncharacterized protein.
    
 0.981
A0A178B3F4
TPR-like protein.
   
 0.975
A0A178B9M9
ANAPC5 domain-containing protein.
    
 0.968
A0A178B516
Galactose-binding like protein.
    
 0.965
A0A178AZC1
RING/U-box.
    
 0.963
A0A178AQY3
TPR-like protein.
    
 0.962
A0A178B048
Kinase-like protein; Belongs to the protein kinase superfamily.
   
 0.956
A0A178ABX3
UBC-like protein.
   
 0.955
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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