A0A178AJ36 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AJ36

Uncharacterized protein. (648 aa)

Predicted Functional Partners:

EFM7

0.533

A0A178AHR0

0.531

A0A178AT07

0.526

A0A178B986

0.510

A0A178BBP8

0.502

A0A178AK01

0.462

A0A178BCI1

0.459

A0A178AXH3

0.419

A0A178AG24

0.409

A0A178AGJ9

0.409

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A178AG24	A0A178AGJ9	A0A178AG24	A0A178AGJ9	Flavo protein.	Flavo protein.	0.967
A0A178AG24	A0A178AJ36	A0A178AG24	A0A178AJ36	Flavo protein.	Uncharacterized protein.	0.409
A0A178AGJ9	A0A178AG24	A0A178AGJ9	A0A178AG24	Flavo protein.	Flavo protein.	0.967
A0A178AGJ9	A0A178AJ36	A0A178AGJ9	A0A178AJ36	Flavo protein.	Uncharacterized protein.	0.409
A0A178AHR0	A0A178AJ36	A0A178AHR0	A0A178AJ36	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A178AJ36	A0A178AG24	A0A178AJ36	A0A178AG24	Uncharacterized protein.	Flavo protein.	0.409
A0A178AJ36	A0A178AGJ9	A0A178AJ36	A0A178AGJ9	Uncharacterized protein.	Flavo protein.	0.409
A0A178AJ36	A0A178AHR0	A0A178AJ36	A0A178AHR0	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A178AJ36	A0A178AK01	A0A178AJ36	A0A178AK01	Uncharacterized protein.	Histidine biosynthesis trifunctional protein.	0.462
A0A178AJ36	A0A178AT07	A0A178AJ36	A0A178AT07	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A178AJ36	A0A178AXH3	A0A178AJ36	A0A178AXH3	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.419
A0A178AJ36	A0A178B986	A0A178AJ36	A0A178B986	Uncharacterized protein.	Aldolase.	0.510
A0A178AJ36	A0A178BBP8	A0A178AJ36	A0A178BBP8	Uncharacterized protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.502
A0A178AJ36	A0A178BCI1	A0A178AJ36	A0A178BCI1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.459
A0A178AJ36	EFM7	A0A178AJ36	A0A178ACR8	Uncharacterized protein.	Protein N-terminal and lysine N-methyltransferase EFM7; S-adenosyl-L-methionine-dependent protein methyltransferase that trimethylates the N-terminal glycine 'Gly-2' of elongation factor 1-alpha, before also catalyzing the mono-and dimethylation of 'Lys-3'. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM7 family.	0.533
A0A178AK01	A0A178AJ36	A0A178AK01	A0A178AJ36	Histidine biosynthesis trifunctional protein.	Uncharacterized protein.	0.462
A0A178AK01	A0A178B986	A0A178AK01	A0A178B986	Histidine biosynthesis trifunctional protein.	Aldolase.	0.408
A0A178AT07	A0A178AJ36	A0A178AT07	A0A178AJ36	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A178AT07	A0A178BBP8	A0A178AT07	A0A178BBP8	Uncharacterized protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.991
A0A178AT07	A0A178BCI1	A0A178AT07	A0A178BCI1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.989