Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AJ37Uncharacterized protein. (491 aa)    
Predicted Functional Partners:
A0A178BCK0
Uncharacterized protein.
   
 
 0.667
A0A178AM36
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.656
A0A178APK0
Ribosomal protein L2.
   
   0.651
A0A178AH85
MRP-L46 domain-containing protein.
   
 
 0.624
A0A178AS66
Uncharacterized protein.
   
 
 0.618
A0A178B090
Ribonuclease III.
   
 
 0.616
A0A178ACZ6
Ribosomal protein S2.
   
 
 0.614
A0A178B6D9
Uncharacterized protein.
   
 
 0.611
A0A178AB55
50S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.607
A0A178ARN8
Ribosomal protein L4.
   
 
 0.597
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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