Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AJ91RNA-binding domain-containing protein. (828 aa)    
Predicted Functional Partners:
A0A178ABN2
ARM repeat-containing protein.
   
  0.999
A0A178AD35
rRNA processing protein-like protein Bystin.
   
 0.999
A0A178AN27
Brix-domain-containing protein.
   
  0.999
A0A178ASR6
Utp21-domain-containing protein.
   
 0.999
A0A178B017
DUF663-domain-containing protein.
  
 0.999
A0A178B4P4
BP28CT domain-containing protein.
   
  0.999
A0A178B5S6
WD40 repeat-like protein.
   
 0.999
A0A178B8U7
Small nucleolar ribonucleo protein-like protein complex subunit.
   
  0.999
A0A178ALC6
BING4CT-domain-containing protein.
   
  0.998
A0A178AEG9
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 0.996
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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