Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AJC6Uncharacterized protein. (1602 aa)    
Predicted Functional Partners:
A0A178B941
Uncharacterized protein.
    
 0.962
A0A178AG05
DNA ligase.
   
 0.928
A0A178ASB7
SPOC domain-like protein.
    
 0.884
A0A178AHG6
ATP-dependent DNA helicase II subunit 1.
    
 0.780
A0A178AHJ2
Uncharacterized protein.
    
 0.780
A0A178BDD2
CPSF_A domain-containing protein.
   
 0.763
A0A178AMF1
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 0.745
A0A178B1U5
Fip1 domain-containing protein.
    
 0.732
A0A178B4V7
WD40 repeat-like protein.
    
 0.726
A0A178B6X5
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.724
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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