A0A178AL41 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AL41

Phosphoribosyl pyrophosphokinase. (321 aa)

Predicted Functional Partners:

A0A178AYK6

0.990

A0A178B0D6

0.975

A0A178AQV1

0.949

A0A178B437

0.944

A0A178AUX6

0.930

A0A178AKB4

0.926

A0A178BCR8

0.923

A0A178AZQ2

0.918

A0A178B537

0.918

A0A178AST7

0.886

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AKB4	A0A178AL41	Amidophosphoribosyltransferase.	Phosphoribosyl pyrophosphokinase.	0.926
A0A178AKB4	A0A178AUX6	Amidophosphoribosyltransferase.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.400
A0A178AKB4	A0A178AYK6	Amidophosphoribosyltransferase.	Phosphoribosyl pyrophosphokinase.	0.926
A0A178AKB4	A0A178AZQ2	Amidophosphoribosyltransferase.	Orotate phosphoribosyltransferase.	0.609
A0A178AKB4	A0A178B0D6	Amidophosphoribosyltransferase.	Phosphoribosyl pyrophosphokinase.	0.926
A0A178AKB4	A0A178B537	Amidophosphoribosyltransferase.	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family.	0.556
A0A178AKB4	A0A178BCR8	Amidophosphoribosyltransferase.	HisG-domain-containing protein.	0.552
A0A178AL41	A0A178AKB4	Phosphoribosyl pyrophosphokinase.	Amidophosphoribosyltransferase.	0.926
A0A178AL41	A0A178AQV1	Phosphoribosyl pyrophosphokinase.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.949
A0A178AL41	A0A178AST7	Phosphoribosyl pyrophosphokinase.	Phosphoglucomutase, first 3 domain-containing protein; Belongs to the phosphohexose mutase family.	0.886
A0A178AL41	A0A178AUX6	Phosphoribosyl pyrophosphokinase.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.930
A0A178AL41	A0A178AYK6	Phosphoribosyl pyrophosphokinase.	Phosphoribosyl pyrophosphokinase.	0.990
A0A178AL41	A0A178AZQ2	Phosphoribosyl pyrophosphokinase.	Orotate phosphoribosyltransferase.	0.918
A0A178AL41	A0A178B0D6	Phosphoribosyl pyrophosphokinase.	Phosphoribosyl pyrophosphokinase.	0.975
A0A178AL41	A0A178B437	Phosphoribosyl pyrophosphokinase.	Ribose 5-phosphate isomerase.	0.944
A0A178AL41	A0A178B537	Phosphoribosyl pyrophosphokinase.	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family.	0.918
A0A178AL41	A0A178BCR8	Phosphoribosyl pyrophosphokinase.	HisG-domain-containing protein.	0.923
A0A178AQV1	A0A178AL41	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Phosphoribosyl pyrophosphokinase.	0.949
A0A178AQV1	A0A178AST7	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Phosphoglucomutase, first 3 domain-containing protein; Belongs to the phosphohexose mutase family.	0.901
A0A178AQV1	A0A178AUX6	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.940