Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AL65NAD(P)-binding protein. (301 aa)    
Predicted Functional Partners:
A0A178APF8
RNA-binding domain-containing protein.
    
 0.562
A0A178ATY4
Uncharacterized protein.
    
 0.562
A0A178BEW3
Uncharacterized protein.
    
 0.562
A0A178A7N3
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.559
A0A178B723
Splicing factor, CC1-like protein.
    
 
 0.549
A0A178AQL2
Uncharacterized protein.
    
   0.507
A0A178A8I3
RNA-binding domain-containing protein.
    
 0.471
A0A178AZX0
Cell cycle control protein cwf14.
    
   0.411
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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