Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
A0A178ALB4CBM1 domain-containing protein. (246 aa)    
Predicted Functional Partners:
A0A178APB2
DEAD-domain-containing protein.
   
  0.905
A0A178BB11
Splicing factor 3B subunit 1.
   
 0.879
A0A178AD25
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.863
A0A178B8Y3
Uncharacterized protein.
   
  0.863
A0A178AU96
MFAP1 domain-containing protein.
    
 0.861
A0A178AI16
PRP38-domain-containing protein.
   
 0.856
A0A178AGT7
LUC7-domain-containing protein.
   
  0.854
A0A178AC93
Small nuclear ribonucleoprotein Sm D2.
    
  0.847
A0A178BDW4
Small nuclear ribonucleoprotein G.
    
  0.847
A0A178A7N3
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.846
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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