A0A178ALD6 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178ALD6

Glyco_trans_2-like domain-containing protein. (789 aa)

Predicted Functional Partners:

A0A178AYT0

0.776

A0A178BBB0

0.725

A0A178AQS6

0.690

A0A178AV08

0.646

A0A178AYA2

0.646

A0A178AL42

0.609

A0A178AD54

0.597

A0A178B7U3

0.550

A0A178B8J5

0.536

A0A178AYK3

0.534

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AD54	A0A178ALD6	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Glyco_trans_2-like domain-containing protein.	0.597
A0A178AD54	A0A178AQS6	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	UBA domain-containing protein.	0.515
A0A178AD54	A0A178AV08	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	SH3 domain-containing protein.	0.488
A0A178AD54	A0A178AYA2	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	BAR-domain-containing protein.	0.488
A0A178AD54	A0A178AYK3	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Clathrin adaptor, mu subunit; Belongs to the adaptor complexes medium subunit family.	0.424
A0A178AD54	A0A178AYT0	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	0.912
A0A178AD54	A0A178B7U3	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	ANTH-domain-containing protein.	0.465
A0A178AD54	A0A178B8J5	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.766
A0A178AD54	A0A178BBB0	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.553
A0A178AL42	A0A178ALD6	Concanavalin A-like lectin/glucanase.	Glyco_trans_2-like domain-containing protein.	0.609
A0A178AL42	A0A178AQS6	Concanavalin A-like lectin/glucanase.	UBA domain-containing protein.	0.625
A0A178ALD6	A0A178AD54	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.597
A0A178ALD6	A0A178AL42	Glyco_trans_2-like domain-containing protein.	Concanavalin A-like lectin/glucanase.	0.609
A0A178ALD6	A0A178AQS6	Glyco_trans_2-like domain-containing protein.	UBA domain-containing protein.	0.690
A0A178ALD6	A0A178AV08	Glyco_trans_2-like domain-containing protein.	SH3 domain-containing protein.	0.646
A0A178ALD6	A0A178AYA2	Glyco_trans_2-like domain-containing protein.	BAR-domain-containing protein.	0.646
A0A178ALD6	A0A178AYK3	Glyco_trans_2-like domain-containing protein.	Clathrin adaptor, mu subunit; Belongs to the adaptor complexes medium subunit family.	0.534
A0A178ALD6	A0A178AYT0	Glyco_trans_2-like domain-containing protein.	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	0.776
A0A178ALD6	A0A178B7U3	Glyco_trans_2-like domain-containing protein.	ANTH-domain-containing protein.	0.550
A0A178ALD6	A0A178B8J5	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.536