Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ALR5YIF1-domain-containing protein. (338 aa)    
Predicted Functional Partners:
A0A178ARX2
Protein YIP.
   
 
 0.979
A0A178BAT9
PRA1 family protein.
   
 
 0.978
A0A178AWT9
ER lumen protein-retaining receptor.
   
 
 0.927
A0A178BAY4
Uncharacterized protein.
   
 
 0.917
A0A178AQK7
Uncharacterized protein.
   
 
 0.859
A0A178AVQ5
Uncharacterized protein.
   
 
 0.853
A0A178AWC4
WW domain-containing protein.
   
 
 0.853
A0A178AHP8
GOLD domain-containing protein.
   
 
 0.847
A0A178A9E4
Uncharacterized protein.
   
 
 0.827
A0A178AAS8
Protein YOP1.
    
 
 0.754
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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