STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ALR9Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
A0A178A7U5
NUC153 domain-containing protein.
   
 
 0.988
A0A178AMM6
RNA helicase.
   
 
 0.988
A0A178AZ11
DUF947-domain-containing protein.
   
 
 0.988
A0A178ANK2
DEAD-domain-containing protein.
   
 
 0.986
A0A178APE4
KH domain-containing protein.
   
 
 0.984
A0A178AWG3
Uncharacterized protein.
   
 
 0.984
A0A178B5S6
WD40 repeat-like protein.
   
 
 0.981
A0A178AR20
Uncharacterized protein.
   
 
 0.980
A0A178AD35
rRNA processing protein-like protein Bystin.
   
 
 0.978
A0A178AS55
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.977
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.