Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ALS8Matrin-type domain-containing protein. (235 aa)    
Predicted Functional Partners:
A0A178ANH9
Splicing factor 3B subunit 5/RDS3 complex subunit 10.
   
 0.999
A0A178AQU8
Matrin-type domain-containing protein.
   
 0.999
A0A178AXY5
DUF382-domain-containing protein.
   
 0.999
A0A178AZZ4
RNA-binding domain-containing protein.
   
 0.999
A0A178B1Y0
U2 small nuclear ribonucleo protein A.
    
 0.999
A0A178B8Y3
Uncharacterized protein.
   
 0.999
A0A178BB11
Splicing factor 3B subunit 1.
   
 0.999
A0A178BDW4
Small nuclear ribonucleoprotein G.
   
 0.999
A0A178AC93
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
A0A178AH94
PHF5-like protein.
   
 0.998
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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