STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ALV9MATE efflux family protein. (516 aa)    
Predicted Functional Partners:
A0A178AF29
SAM-dependent MTase TRM10-type domain-containing protein.
   
 0.707
A0A178AEC8
NAD(P)-binding protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.646
A0A178AJW5
NAD(P)-binding protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.646
A0A178ARI5
Pex14_N domain-containing protein.
     
  0.607
A0A178BCN2
SH3 domain-containing protein.
     
  0.607
A0A178AVF5
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.586
A0A178AEX1
60S ribosomal protein L5-B.
     
  0.561
A0A178B8S3
Lycopene beta-cyclase.
   
  
 0.528
A0A178B9H5
Farnesyl-diphosphate farnesyl transferas-like protein.
   
  
 0.528
A0A178AFB8
TBP-domain-containing protein.
   
    0.513
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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