Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AMA8Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
A0A178ARE4
Ribosomal protein L15.
   
 0.994
A0A178B6D9
Uncharacterized protein.
   
 0.994
A0A178B168
MRP-L47-domain-containing protein.
   
 0.992
A0A178ASL3
50S ribosomal protein-like protein L13.
   
 
 0.991
A0A178B370
Ribosomal protein S12.
   
 0.991
A0A178APZ6
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 0.990
A0A178AH85
MRP-L46 domain-containing protein.
   
 0.987
A0A178B2R0
Ribosomal protein L27.
   
 
 0.986
A0A178B7T9
Uncharacterized protein.
   
 0.986
A0A178BE25
Uncharacterized protein.
   
 
 0.986
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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