Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A178AMH7Uncharacterized protein. (270 aa)    
Predicted Functional Partners:
A0A178B9E2
L30e-like protein.
   
 0.971
A0A178B4T9
Fibrillarin.
   
 0.965
A0A178AYF1
Nop domain-containing protein.
  
 0.955
A0A178ACR7
Nop-domain-containing protein.
   
 0.934
A0A178AAQ1
NAF1-domain-containing protein.
   
 0.885
A0A178AM35
CP-type G domain-containing protein.
   
 0.862
A0A178ADP2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.861
A0A178A969
tRNA pseudouridine synthase B.
   
 0.858
A0A178B0P9
Putative rRNA pseudouridine synthase.
   
 0.858
A0A178B7M3
Pseudouridine synthase.
   
 0.858
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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