Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AN22HMG box domain-containing protein. (329 aa)    
Predicted Functional Partners:
A0A178A9N8
SPT16-domain-containing protein.
   
 0.966
A0A178AXJ5
TPR-like protein.
   
 0.938
A0A178AX91
Transcription factor IWS1.
   
 0.925
A0A178B2F0
CDC73-domain-containing protein.
   
 0.921
A0A178AN64
Uncharacterized protein.
   
 0.915
A0A178AI45
RPOL9 domain-containing protein.
    
 0.896
A0A178ALM7
Metallothionein-I gene transcription activator.
    
  0.894
A0A178AV18
Uncharacterized protein.
    
  0.893
A0A178AFA4
Plus-3-domain-containing protein.
   
 0.885
A0A178APD9
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.882
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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