Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ANW4Rhomboid domain-containing protein. (424 aa)    
Predicted Functional Partners:
A0A178AM57
PHB domain-containing protein.
   
 0.692
A0A178AFX1
ATP-dependent metallopeptidase Hfl.
   
 
 0.622
A0A178AC59
Prohibitin.
    
 0.617
A0A178A811
ATP-dependent metallopeptidase Hfl.
   
 
 0.538
A0A178AEM2
Rhomboid domain-containing protein.
      
 0.522
A0A178B8B5
Prohibitin.
    
 0.513
A0A178AD54
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.511
A0A178AXG7
ARM repeat-containing protein.
    
   0.486
A0A178AAP3
Uncharacterized protein.
  
  
 0.470
A0A178B2P7
5-formyltetrahydrofolate cyclo-ligase.
  
  
 0.470
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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