A0A178AP35 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AP35

Putative FAD-binding oxidoreductase. (492 aa)

Predicted Functional Partners:

A0A178AEP7

0.651

A0A178ARP6

0.651

A0A178AT29

0.651

A0A178AVL4

0.651

A0A178B0D4

0.651

A0A178B277

0.651

A0A178B3V9

0.483

A0A178BBU9

0.483

A0A178AKJ0

0.459

A0A178B1T7

0.450

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AEP7	A0A178AKJ0	FMN-dependent alpha-hydroxy acid dehydrogenase.	Malate synthase; Belongs to the malate synthase family.	0.676
A0A178AEP7	A0A178AP35	FMN-dependent alpha-hydroxy acid dehydrogenase.	Putative FAD-binding oxidoreductase.	0.651
A0A178AEP7	A0A178ARP6	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.632
A0A178AEP7	A0A178AT29	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein.	0.632
A0A178AEP7	A0A178AVL4	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.678
A0A178AEP7	A0A178B0D4	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.632
A0A178AEP7	A0A178B277	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.632
A0A178AEP7	A0A178B3V9	FMN-dependent alpha-hydroxy acid dehydrogenase.	Uncharacterized protein.	0.883
A0A178AEP7	A0A178BBU9	FMN-dependent alpha-hydroxy acid dehydrogenase.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.883
A0A178AKJ0	A0A178AEP7	Malate synthase; Belongs to the malate synthase family.	FMN-dependent alpha-hydroxy acid dehydrogenase.	0.676
A0A178AKJ0	A0A178AP35	Malate synthase; Belongs to the malate synthase family.	Putative FAD-binding oxidoreductase.	0.459
A0A178AKJ0	A0A178ARP6	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.676
A0A178AKJ0	A0A178AT29	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein.	0.683
A0A178AKJ0	A0A178AVL4	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.676
A0A178AKJ0	A0A178B0D4	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.676
A0A178AKJ0	A0A178B277	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.676
A0A178AP35	A0A178AEP7	Putative FAD-binding oxidoreductase.	FMN-dependent alpha-hydroxy acid dehydrogenase.	0.651
A0A178AP35	A0A178AKJ0	Putative FAD-binding oxidoreductase.	Malate synthase; Belongs to the malate synthase family.	0.459
A0A178AP35	A0A178ARP6	Putative FAD-binding oxidoreductase.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.651
A0A178AP35	A0A178AT29	Putative FAD-binding oxidoreductase.	Uncharacterized protein.	0.651