A0A178API5 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A178API5

NACHT domain-containing protein. (1129 aa)

Predicted Functional Partners:

A0A178AFU6

0.686

A0A178B2F0

0.643

A0A178B3F4

0.642

A0A178AN64

0.641

A0A178B516

0.640

A0A178ABZ2

0.638

A0A178B762

0.638

A0A178B9M9

0.637

A0A178ABV2

0.629

A0A178AKK9

0.603

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178ABV2	A0A178ABZ2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.999
A0A178ABV2	A0A178API5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	NACHT domain-containing protein.	0.629
A0A178ABV2	A0A178B3F4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	TPR-like protein.	0.999
A0A178ABV2	A0A178B516	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Galactose-binding like protein.	0.999
A0A178ABV2	A0A178B762	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.999
A0A178ABV2	A0A178B9M9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	ANAPC5 domain-containing protein.	0.999
A0A178ABZ2	A0A178ABV2	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
A0A178ABZ2	A0A178API5	Uncharacterized protein.	NACHT domain-containing protein.	0.638
A0A178ABZ2	A0A178B3F4	Uncharacterized protein.	TPR-like protein.	0.999
A0A178ABZ2	A0A178B516	Uncharacterized protein.	Galactose-binding like protein.	0.999
A0A178ABZ2	A0A178B762	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A178ABZ2	A0A178B9M9	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
A0A178AFU6	A0A178API5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	NACHT domain-containing protein.	0.686
A0A178AKK9	A0A178API5	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	NACHT domain-containing protein.	0.603
A0A178AN64	A0A178API5	Uncharacterized protein.	NACHT domain-containing protein.	0.641
A0A178AN64	A0A178B2F0	Uncharacterized protein.	CDC73-domain-containing protein.	0.999
A0A178API5	A0A178ABV2	NACHT domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.629
A0A178API5	A0A178ABZ2	NACHT domain-containing protein.	Uncharacterized protein.	0.638
A0A178API5	A0A178AFU6	NACHT domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.686
A0A178API5	A0A178AKK9	NACHT domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.603