A0A178APM8 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178APM8

Uncharacterized protein. (831 aa)

Predicted Functional Partners:

A0A178AZ65

0.976

A0A178AGB3

0.928

A0A178B9N7

0.928

A0A178AL01

0.927

A0A178BC92

0.912

A0A178AJW7

0.875

A0A178AZ95

0.875

A0A178A8V5

0.874

A0A178ADY3

0.859

A0A178BBM4

0.847

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178A8V5	A0A178ADY3	Uncharacterized protein.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.441
A0A178A8V5	A0A178AGB3	Uncharacterized protein.	Pkinase-domain-containing protein.	0.958
A0A178A8V5	A0A178AL01	Uncharacterized protein.	SRF-TF-domain-containing protein.	0.684
A0A178A8V5	A0A178APM8	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A178A8V5	A0A178AZ65	Uncharacterized protein.	Fork-head domain-containing protein.	0.747
A0A178A8V5	A0A178B9N7	Uncharacterized protein.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.934
A0A178A8V5	A0A178BC92	Uncharacterized protein.	MADS-box domain-containing protein.	0.527
A0A178ADY3	A0A178A8V5	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.441
A0A178ADY3	A0A178AGB3	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Pkinase-domain-containing protein.	0.482
A0A178ADY3	A0A178APM8	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.859
A0A178ADY3	A0A178AZ65	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Fork-head domain-containing protein.	0.501
A0A178ADY3	A0A178B9N7	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.482
A0A178AGB3	A0A178A8V5	Pkinase-domain-containing protein.	Uncharacterized protein.	0.958
A0A178AGB3	A0A178ADY3	Pkinase-domain-containing protein.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.482
A0A178AGB3	A0A178APM8	Pkinase-domain-containing protein.	Uncharacterized protein.	0.928
A0A178AGB3	A0A178AZ65	Pkinase-domain-containing protein.	Fork-head domain-containing protein.	0.911
A0A178AGB3	A0A178BBM4	Pkinase-domain-containing protein.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.921
A0A178AJW7	A0A178APM8	HCP-like protein.	Uncharacterized protein.	0.875
A0A178AJW7	A0A178AZ95	HCP-like protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.997
A0A178AL01	A0A178A8V5	SRF-TF-domain-containing protein.	Uncharacterized protein.	0.684