Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A178APQ6Lariat debranching enzyme. (562 aa)    
Predicted Functional Partners:
A0A178AA76
Uncharacterized protein.
   
 
 0.973
A0A178AQC9
RNB-domain-containing protein.
    
 
 0.660
A0A178AAZ9
ARM repeat-containing protein.
      
 0.647
A0A178B658
Small nuclear ribonucleoprotein Sm D3.
   
  
 0.647
A0A178B6P5
Lactamase_B_4 domain-containing protein.
      
 0.646
A0A178ADL9
Antiviral helicase.
    
   0.597
A0A178AFG3
Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.
    
   0.576
A0A178AM43
Uncharacterized protein.
   
  
 0.545
A0A178ANY9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.537
A0A178AYK0
Ribonuclease III.
      
 0.537
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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