A0A178APV4 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178APV4

Uncharacterized protein. (1015 aa)

Predicted Functional Partners:

A0A178AIJ9

0.878

A0A178B1R0

0.878

A0A178AEV2

0.858

A0A178AAH1

0.856

A0A178BAX5

0.856

A0A178AGN6

0.845

A0A178A879

0.727

A0A178AL94

0.713

A0A178BDE3

0.713

A0A178AJ31

0.655

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178A879	A0A178AGN6	EF-hand superfamily Ca2+-modulated protein.	EF-hand.	0.941
A0A178A879	A0A178AIJ9	EF-hand superfamily Ca2+-modulated protein.	EF-hand protein; Belongs to the calmodulin family.	0.984
A0A178A879	A0A178AJ31	EF-hand superfamily Ca2+-modulated protein.	Uncharacterized protein.	0.454
A0A178A879	A0A178AL94	EF-hand superfamily Ca2+-modulated protein.	DUF1348-domain-containing protein.	0.868
A0A178A879	A0A178APV4	EF-hand superfamily Ca2+-modulated protein.	Uncharacterized protein.	0.727
A0A178A879	A0A178B1R0	EF-hand superfamily Ca2+-modulated protein.	EF-hand.	0.975
A0A178A879	A0A178BDE3	EF-hand superfamily Ca2+-modulated protein.	DUF1348-domain-containing protein.	0.868
A0A178AAH1	A0A178AEV2	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.999
A0A178AAH1	A0A178APV4	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Uncharacterized protein.	0.856
A0A178AAH1	A0A178BAX5	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.	0.999
A0A178AEV2	A0A178AAH1	Structural maintenance of chromosomes protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.999
A0A178AEV2	A0A178AJ31	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.430
A0A178AEV2	A0A178APV4	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.858
A0A178AEV2	A0A178BAX5	Structural maintenance of chromosomes protein.	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.	0.999
A0A178AGN6	A0A178A879	EF-hand.	EF-hand superfamily Ca2+-modulated protein.	0.941
A0A178AGN6	A0A178AIJ9	EF-hand.	EF-hand protein; Belongs to the calmodulin family.	0.978
A0A178AGN6	A0A178AJ31	EF-hand.	Uncharacterized protein.	0.454
A0A178AGN6	A0A178AL94	EF-hand.	DUF1348-domain-containing protein.	0.868
A0A178AGN6	A0A178APV4	EF-hand.	Uncharacterized protein.	0.845
A0A178AGN6	A0A178B1R0	EF-hand.	EF-hand.	0.984