A0A178AQ04 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AQ04

Uncharacterized protein. (468 aa)

Predicted Functional Partners:

A0A178B3X6

0.810

A0A178AKM6

0.777

A0A178AQH8

0.770

A0A178AWS4

0.669

A0A178BA77

0.669

A0A178A9Z7

0.645

A0A178ABK5

0.628

A0A178AG80

0.628

A0A178B6I8

0.613

A0A178ABP3

0.592

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178A9Z7	A0A178ABP3	GDPD-domain-containing protein.	Uncharacterized protein.	0.416
A0A178A9Z7	A0A178AQ04	GDPD-domain-containing protein.	Uncharacterized protein.	0.645
A0A178ABK5	A0A178AG80	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Uncharacterized protein.	0.999
A0A178ABK5	A0A178AQ04	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Uncharacterized protein.	0.628
A0A178ABK5	A0A178AWS4	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	T-complex protein 1 subunit gamma.	0.999
A0A178ABK5	A0A178BA77	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Uncharacterized protein.	0.999
A0A178ABP3	A0A178A9Z7	Uncharacterized protein.	GDPD-domain-containing protein.	0.416
A0A178ABP3	A0A178AKM6	Uncharacterized protein.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.925
A0A178ABP3	A0A178AQ04	Uncharacterized protein.	Uncharacterized protein.	0.592
A0A178ABP3	A0A178AQH8	Uncharacterized protein.	UBC-like protein.	0.889
A0A178ABP3	A0A178B3X6	Uncharacterized protein.	BRCT domain-containing protein.	0.865
A0A178ABP3	A0A178B6I8	Uncharacterized protein.	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.583
A0A178AG80	A0A178ABK5	Uncharacterized protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
A0A178AG80	A0A178AQ04	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A178AG80	A0A178AWS4	Uncharacterized protein.	T-complex protein 1 subunit gamma.	0.999
A0A178AG80	A0A178BA77	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A178AKM6	A0A178ABP3	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.925
A0A178AKM6	A0A178AQ04	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.777
A0A178AKM6	A0A178AQH8	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	UBC-like protein.	0.998
A0A178AKM6	A0A178B3X6	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	BRCT domain-containing protein.	0.845