A0A178AQ46 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AQ46

Spindle pole body component. (942 aa)

Predicted Functional Partners:

A0A178ACX8

0.999

A0A178AYK1

0.999

A0A178AQQ0

0.998

A0A178AYL5

0.998

A0A178B132

0.998

A0A178B352

0.998

A0A178B0C2

0.968

A0A178AAF6

0.967

A0A178AIH4

0.953

A0A178AGP9

0.944

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AAF6	A0A178ACX8	Uncharacterized protein.	GP-PDE domain-containing protein; Belongs to the tubulin family.	0.980
A0A178AAF6	A0A178AIH4	Uncharacterized protein.	ARM repeat-containing protein.	0.697
A0A178AAF6	A0A178AQ46	Uncharacterized protein.	Spindle pole body component.	0.967
A0A178AAF6	A0A178AQQ0	Uncharacterized protein.	Spindle pole body component.	0.981
A0A178AAF6	A0A178AYK1	Uncharacterized protein.	Spindle pole body component.	0.898
A0A178AAF6	A0A178AYL5	Uncharacterized protein.	Spindle pole body component.	0.898
A0A178AAF6	A0A178B0C2	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A178AAF6	A0A178B132	Uncharacterized protein.	Uncharacterized protein.	0.652
A0A178AAF6	A0A178B352	Uncharacterized protein.	Spindle pole body component.	0.981
A0A178ACX8	A0A178AAF6	GP-PDE domain-containing protein; Belongs to the tubulin family.	Uncharacterized protein.	0.980
A0A178ACX8	A0A178AGP9	GP-PDE domain-containing protein; Belongs to the tubulin family.	Uncharacterized protein.	0.831
A0A178ACX8	A0A178AIH4	GP-PDE domain-containing protein; Belongs to the tubulin family.	ARM repeat-containing protein.	0.925
A0A178ACX8	A0A178AQ46	GP-PDE domain-containing protein; Belongs to the tubulin family.	Spindle pole body component.	0.999
A0A178ACX8	A0A178AQQ0	GP-PDE domain-containing protein; Belongs to the tubulin family.	Spindle pole body component.	0.997
A0A178ACX8	A0A178AYK1	GP-PDE domain-containing protein; Belongs to the tubulin family.	Spindle pole body component.	0.999
A0A178ACX8	A0A178AYL5	GP-PDE domain-containing protein; Belongs to the tubulin family.	Spindle pole body component.	0.996
A0A178ACX8	A0A178B0C2	GP-PDE domain-containing protein; Belongs to the tubulin family.	Uncharacterized protein.	0.949
A0A178ACX8	A0A178B132	GP-PDE domain-containing protein; Belongs to the tubulin family.	Uncharacterized protein.	0.997
A0A178ACX8	A0A178B352	GP-PDE domain-containing protein; Belongs to the tubulin family.	Spindle pole body component.	0.998
A0A178AGP9	A0A178ACX8	Uncharacterized protein.	GP-PDE domain-containing protein; Belongs to the tubulin family.	0.831