STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDW_08035Hypothetical protein. (242 aa)    
Predicted Functional Partners:
BDW_06670
Hypothetical protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.675
BDW_02410
COG3089 Uncharacterized protein conserved in bacteria.
  
     0.523
BDW_01920
Hypothetical protein.
  
     0.515
BDW_05880
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.496
mutM
Hypothetical protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.473
BDW_06415
Cis/trans isomerase; COG0437 Fe-S-cluster-containing hydrogenase components 1.
  
     0.467
BDW_12460
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.418
Your Current Organism:
Bdellovibrio bacteriovorus W
NCBI taxonomy Id: 765869
Other names: B. bacteriovorus W
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.